T-26c

Protein target name:

MMP13

Mechanism of action:

Inhibitor

Recommended Concentration for use in cells:

10-100 nM

Probe Information

Target and Probe Information

Target Details

Target class:

Protein metabolism

Subclass:

Metallopeptidase

HUGO symbol:

MMP13

Entrez gene ID:

4322

Target alias:

MMP-13, CLG3, MANDP1, MDST, matrix metallopeptidase 13

Probe Details

Chemical Probes Portal ID:

CPP630

PubChem CID:

25192810

ChEMBL ID:

CHEMBL3337894

SMILES string:

O=C(O)c1ccc(cc1)COCc4c2c(\N=C(/NC2=O)C(=O)NCc3cccc(OC)c3)sc4

InChi Key:

CDQRIIUMNLMHRH-UHFFFAOYSA-N

Control compound:

T-26f (5-((benzyl(methyl)amino)methyl)-N-(3-methoxybenzyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-2-carboxamide)

Physico-chemical properties

Solubility - preferred solvent:

DMSO

Solubility - concentration:

20 mM

Storage Recommendations

Storage (dry powder):

-20

Storage (solution):

20 mM stock in DMSO at -80 in small aliquots

Storage sensitivities:

Limit to one freeze-thaw cycle for 20 mM stock solution

Validation in Cells and Model Organisms

In vitro validation

On target activity

Potency:

IC50

0.0069 nM

Potency assay:

Inhibition of the human MMP13 catalytic domain

PDB ID for probe-target interaction (3D structure):

3WV1

Off target activity

Potency (off target):

IC50

Off target protein and potency:

MMP2: 18 nM, MMP10: 160 nMMMP3: 600 nM, MMP8: 780 nM

Potency assay (off target):

MMP1, MMP7, MMP9, MMP14, TACE > 10,000 nM

In cell validation

On target activity in cells

Potency assay (cells):

In nasal septum cartilage explants (bovine), T-26c inhibited cytokine-induced collagen degradation by MMPs (87.4% inhibition at 0.1 uM).

In vivo validation

Organism:

Guinea pig (male)

Dose:

10 mg/kg (oral); 1 mg/kg (IV)

Route of delivery:

IntravenousOral

Systemic clearance:

431 mL/h/kg (IV)

Fraction of probe bound to plasma protein:

0.28

Cmax:

911 ng/mL (oral)

Tmax:

.83 h (oral)

Primary Reference

Reference (PMID):

25192810

T-26c

Probe Information

Target Details

MMP-13, CLG3, MANDP1, MDST, matrix metallopeptidase 13

Probe Details

Physico-chemical properties

In vitro validation

In cell validation

In vivo validation

Primary Reference

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T-26c

Probe Information

Target Details

MMP-13, CLG3, MANDP1, MDST, matrix metallopeptidase 13

Probe Details

Physico-chemical properties

In vitro validation

In cell validation

In vivo validation

Primary Reference

Supporting Organizations

Interested in supporting the portal?