EPZ020411

Inhibitor of PRMT6

Structure

Information

  • PRMT6
  • Inhibitor

In Vitro Validations

Uniprot ID: Q96LA8
Target Class: Epigenetic
Target SubClass: Protein methyltransferase
Potency: IC50
Potency Value: 0.010 uM
Potency Assay: Inhibition of 3H-SAM-dependent labeling of peptide substrate and quantification of 3H-labeled peptide.
PDB ID for probe-target interaction (3D structure): 4Y30
Structure-activity relationship: Yes, 21 compounds with in vitro IC50 data for PRMT6, PRMT8, and PRMT. Analogues with selectivity for PRMT6 over both PRMT1 and PRMT8 were obtained by extending further off the para position of the aryl group. Increased potency for PRMT6 compared to PRMT1 and PRMT8 was achieved with oxygen- and nitrogen-linked alkyl compounds.
Target aliases:
Protein arginine N-methyltransferase 6, HRMT1L6, P ...

In Cell Validations

In Vivo Data

Off-Target Selectivity Assesments

Potency end-point : IC50 PRMT8 0.223 uM, PRMT1 0.119 uM
Potency assay (off target): Same as on-target assay. The probe was also >100-fold selective against other methyltransferases, including PRMT3, PRMT4, PRMT5, and PRMT7.
Probe Selectivity in Vitro:

Unknown

Potency assay, off target (cells): The probe was 10-fold selective for PRMT6 > PRMT1 by comparing methylation of PRMT6-specific substrates to PRMT1 substrates in A375 cells.
Probe Selectivity in Cell:

Unknown

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SERP ratings and comments


SERP Ratings

In Cell Rating
In Model Organisms

SERP Comments:

EPZ020411 is not greatly selective for PRMT6 over PRMT1 or PRMT8 in vitro. PRMT6 is the only PRMT known to methylate the H3R2 position, and EPZ020411 can be used as a probe to assess the functionality of this post-translational modification. While this compound shows poor bioavailability following oral dosing (<5%), subcutaneous (SC) dosing results in significant plasma levels, making this compound suitable for in vivo studies of the H3R2 mark using SC dosing.

(last updated: 30 May 2016 )

SERP Ratings

In Cell Rating
In Model Organisms

SERP Comments:

Selectivity over some other isoforms of arginine methyltransferase is limited 10 - 20 fold. No data is available on CNS exposure of EPZ02041.

(last updated: 6 Jun 2016 )

SERP Ratings

In Cell Rating
In Model Organisms

SERP Comments:

EPZ020411 is a potent inhibitor of PRMT6 in biochemical (IC50 = 10 nM) and cellular (IC50 = 600 nM) assays EPZ020411 is selective against the related enzymes PRMT3, PRMT4, PRMT5, and PRMT7 in a biochemical assay, and relatively selective against PRMT1 and PRMT8, in biochemical (IC50's = 100 and 200 nM, respectively) and cellular assays (for PRMT1). Even though EPZ020411 is selective within the PRMT family, there is no information on other relevant human methyltransferases. (See 10.1021/acs.jmedchem.5b01772  and 10.1021/acschembio.5b00839 for examples of PRMT6 inhibitors profiled vs. other methyltransferases). In vivo EPZ020411 is 65% bioavailable following 5 mg/kg s.c. administration. Unfortunately, the unbound blood concentration of EPZ020411 is above the H3R2-methylation IC50 (cellular assay) for less than 6h. Additional studies will be required to define if this exposure is enough for a relevant pharmacological effect in vivo.

(last updated: 15 Jun 2017 )